Changes in version 3.1.9000                       

                         Changes in version 3.1                         

New features

  - preliminary integration of code from SCnext/mixedSCGLR written by
    Jocelyn Chauvet (issue #11)
  - moved parallelization to future framework. Need future.apply package
    (issue #16)
  - added progress to scglrCrossVal and scglrThemeBackward functions
    using progressr package (issue #17)

Deprecations

  - parameter nfolds of scglrCrossVal as been renamed to folds and now
    accepts also vectors. For now a warning is issued and provided value
    is used but update your code as it will likely be removed in a
    future version.
  - parameter mc.cores of scglrCrossVal is now deprecated as of the move
    to future framework for parallelization.

bug fixes and improvements

  - fix bug happening when providing a single Y variable to sglrTheme
    (issue #1)
  - allow to provide folds for cross validation defined by user (issue
    #2)
  - individual beta and gamma for themes were not properly computed
    (issue #5)
  - improve evaluation of linear predictors in theme function (issue #8)
  - remove dependency on expm package (issue #10)
  - error message for lack of convergence were improved and
    scglrCrossVal no longer stops when a fold does not converge (issue
    #12)
  - add a plot for scglrCrossVal
  - fix contrasts error in scglrTheme (issue #20)
  - fix some URL in docs
  - move from plsdepot::plsreg2 to pls::plsr to initialize mixed model
    components (issue #22)
  - fix rstudio bug displaying error message when printing a
    MultivariateFormula (in fact a Formula) (issue #23).

                  Changes in version 3.0 (2018-09-28)                   

This major version introduces a new feature allowing to group covariates
in so called themes.

  - added scglrTheme and scglrThemeBackward to handle theme oriented
    selection
  - reworked multivariateFormula to handle themes
  - added new plots targeting themes

Deprecations

  - deprecated barplot in favor of screeplot (same parameters)

                         Changes in version 2.1                         

  - Removed LPLS legacy method
  - changed from ING to PING

                  Changes in version 2.0 (2014-07-17)                   

  - New method is available : SR (Structural Relevance) see vignette
  - Major rewrite of plot styling (not backward compatible)
  - Various fixes and improvements (especially when dealing with a
    single dependant variable)

                         Changes in version 1.0                         

Initial version of SCGLR

  - method LPLS (Local PLS)