{ "_id": "6a1056efacfb0bcc41ca2dfa", "Package": "SCGLR", "Type": "Package", "Title": "Supervised Component Generalized Linear Regression", "Description": "An extension of the Fisher Scoring Algorithm to combine\nPLS regression with GLM estimation in the multivariate context.\nCovariates can also be grouped in themes.", "Version": "3.1.9000", "Date": "2025-03-24", "Authors@R": "c(person(\ngiven = \"Guillaume\",\nfamily = \"Cornu\",\nemail = \"gcornu@cirad.fr\",\nrole = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0002-7523-5176\")),\nperson(\ngiven = \"Frederic\",\nfamily = \"Mortier\",\nemail = \"fmortier@cirad.fr\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-5473-709X\")),\nperson(\ngiven = \"Catherine\",\nfamily = \"Trottier\",\nemail = \"catherine.trottier@univ-montp3.fr\",\nrole = \"aut\"),\nperson(\ngiven = \"Xavier\",\nfamily = \"Bry\",\nemail = \"xavier.bry@univ-montp2.fr\",\nrole = \"aut\"),\nperson(\ngiven = \"Jocelyn\",\nfamily = \"Chauvet\",\nrole = \"aut\",\ncomment = c(ORCID=\"0000-0002-4466-6483\")),\nperson(\ngiven = \"Sylvie\",\nfamily = \"Gourlet-Fleury\",\nemail = \"sylvie.gourlet-fleury@cirad.fr\",\nrole = \"dtc\",\ncomment = c(ORCID = \"0000-0002-1136-4307\", \"Projet CoForChange \")),\nperson(\ngiven = \"Claude\",\nfamily = \"Garcia\",\nemail = \"claude.garcia@cirad.fr\",\nrole = \"dtc\",\ncomment = c(ORCID = \"0000-0002-7351-0226\", \"Projet CoForTips \")),\nperson(\n\"GAMBAS\",\nrole = \"fnd\",\ncomment = \"\")\n)", "License": "CeCILL-2 | GPL-2", "URL": "https://scnext.github.io/SCGLR/, https://github.com/scnext/SCGLR,\nhttps://cran.r-project.org/package=SCGLR", "BugReports": "https://github.com/SCnext/SCGLR/issues", "LazyData": "yes", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Repository": "https://scnext.r-universe.dev", "Date/Publication": "2025-03-27 10:13:21 UTC", "RemoteUrl": "https://github.com/scnext/scglr", "RemoteRef": "HEAD", "RemoteSha": "01d669f0626c936278dea9020ce91df67929dfcf", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-09 07:31:52 UTC", "User": "root" }, "Author": "Guillaume Cornu [aut, cre] (ORCID:\n),\nFrederic Mortier [aut] (ORCID: ),\nCatherine Trottier [aut],\nXavier Bry [aut],\nJocelyn Chauvet [aut] (ORCID: ),\nSylvie Gourlet-Fleury [dtc] (ORCID:\n, Projet CoForChange\n),\nClaude Garcia [dtc] (ORCID: ,\nProjet CoForTips ),\nGAMBAS [fnd] ()", "Maintainer": "Guillaume Cornu ", "MD5sum": "4249f007fcbdbba265ce619ff87135f6", "_user": "scnext", "_type": "src", "_file": "SCGLR_3.1.9000.tar.gz", "_fileid": "fd1c93df82cc445e7a3c75bc1b30001fc1e7083bb710b1bd46671e75b644e586", "_filesize": 1801090, "_sha256": "fd1c93df82cc445e7a3c75bc1b30001fc1e7083bb710b1bd46671e75b644e586", "_created": "2026-05-09T07:31:52.000Z", "_published": "2026-05-22T13:15:27.023Z", "_distro": "noble", "_jobs": [ { "job": 77386950619, "time": 143, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6894006748" }, { "job": 77386950652, "time": 142, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6894007247" }, { "job": 77386950583, "time": 197, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6894008953" }, { "job": 77386950801, "time": 153, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6894004772" }, { "job": 77386949858, "time": 167, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6893991958" }, { "job": 77386949697, "time": 108, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7161397452" }, { "job": 77386950215, "time": 117, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6894003971" }, { "job": 77386951378, "time": 91, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6894001314" }, { "job": 77386951301, "time": 107, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6894003209" } ], "_buildurl": "https://github.com/r-universe/scnext/actions/runs/25595354656", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/scnext/scglr", "_commit": { "id": "01d669f0626c936278dea9020ce91df67929dfcf", "author": "Guillaume Cornu ", "committer": "Guillaume Cornu ", "message": "add r-universe badge and install code\n", "time": 1743070401 }, "_maintainer": { "name": "Guillaume Cornu", "email": "gcornu@cirad.fr", "login": "billy34", "uuid": 21357644, "orcid": "0000-0002-7523-5176" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "Matrix", "role": "Imports" }, { "package": "Formula", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.0.0", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "pROC", "version": ">= 1.9", "role": "Imports" }, { "package": "ade4", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "pls", "role": "Imports" }, { "package": "future", "role": "Suggests" }, { "package": "future.apply", "role": "Suggests" }, { "package": "progressr", "role": "Suggests" } ], "_owner": "scnext", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "partial-least-squares-regression" ], "_stars": 2, "_contributors": [ { "user": "billy34", "count": 116, "uuid": 21357644 }, { "user": "tiemor75", "count": 3, "uuid": 40569116 } ], "_userbio": { "uuid": 40828485, "type": "organization", "name": "SCnext", "description": "The future of supervised component regression" }, "_downloads": { "count": 229, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SCGLR" }, "_devurl": "https://github.com/scnext/scglr", "_pkgdown": "https://scnext.github.io/SCGLR/", "_searchresults": 61, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SCGLR.html", "manual.pdf" ], "_homeurl": "https://github.com/scnext/scglr", "_realowner": "scnext", "_cranurl": true, "_releases": [ { "version": "1.1", "date": "2013-08-01" }, { "version": "1.2", "date": "2014-03-18" }, { "version": "2.0", "date": "2014-07-17" }, { "version": "2.0.1", "date": "2014-10-14" }, { "version": "2.0.2", "date": "2015-02-16" }, { "version": "2.0.3", "date": "2016-03-16" }, { "version": "3.0", "date": "2018-09-28" }, { "version": "3.1.0", "date": "2025-03-26" } ], "_exports": [ "critConvergence", "infoCriterion", "kCompRand", "methodSR", "multivariateFormula", "multivariateGlm.fit", "multivariatePredictGlm", "scglr", "scglrCrossVal", "scglrTheme", "scglrThemeBackward" ], "_datasets": [ { "name": "dataGen", "title": "Sample dataset of abundance of genera in tropical moist forest", "object": "dataGen", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "genus", "title": "Sample dataset of abundance of genera in tropical moist forest", "object": "genus", "class": [ "data.frame" ], "fields": [ "gen1", "gen2", "gen3", "gen4", "gen5", "gen6", "gen7", "gen8", "gen9", "gen10", "gen11", "gen12", "gen13", "gen14", "gen15", "gen16", "gen17", "gen18", "gen19", "gen20", "gen21", "gen22", "gen23", "gen24", "gen25", "gen26", "gen27", "altitude", "pluvio_yr", "forest", "pluvio_1", "pluvio_2", "pluvio_3", "pluvio_4", "pluvio_5", "pluvio_6", "pluvio_7", "pluvio_8", "pluvio_9", "pluvio_10", "pluvio_11", "pluvio_12", "geology", "evi_1", "evi_2", "evi_3", "evi_4", "evi_5", "evi_6", "evi_7", "evi_8", "evi_9", "evi_10", "evi_11", "evi_12", "evi_13", "evi_14", "evi_15", "evi_16", "evi_17", "evi_18", "evi_19", "evi_20", "evi_21", "evi_22", "evi_23", "lon", "lat", "surface" ], "rows": 1000, "table": true, "tojson": true }, { "name": "genus2", "title": "Sample dataset of abundance of genera in tropical moist forest", "object": "genus2", "class": [ "data.frame" ], "fields": [ "gen1", "gen2", "gen3", "gen4", "gen5", "gen6", "gen7", "gen8", "gen9", "gen10", "gen11", "gen12", "gen13", "gen14", "gen15", "evi_1", "evi_2", "evi_3", "evi_4", "evi_5", "evi_6", "evi_7", "evi_8", "evi_9", "evi_10", "evi_11", "evi_12", "evi_13", "evi_14", "evi_15", "evi_16", "evi_17", "evi_18", "evi_19", "evi_20", "evi_21", "evi_22", "evi_23", "MIR", "NIR", "pluvio_an", "pluvio_1", "pluvio_2", "pluvio_3", "pluvio_4", "pluvio_5", "pluvio_6", "pluvio_7", "pluvio_8", "pluvio_9", "pluvio_10", "pluvio_11", "pluvio_12", "altitude", "mois_sec_50", "mois_sec_100", "awd", "mcwd", "wetness", "CWD", "center_x", "center_y", "geology", "inventory", "surface" ], "rows": 1000, "table": true, "tojson": true } ], "_help": [ { "page": "critConvergence", "title": "Auxiliary function for controlling SCGLR fitting", "topics": [ "critConvergence" ] }, { "page": "customize", "title": "Plot customization", "topics": [ "customize" ] }, { "page": "dataGen", "title": "Sample dataset of abundance of genera in tropical moist forest", "topics": [ "dataGen" ] }, { "page": "genus", "title": "Sample dataset of abundance of genera in tropical moist forest", "topics": [ "genus" ] }, { "page": "genus2", "title": "Sample dataset of abundance of genera in tropical moist forest", "topics": [ "genus2" ] }, { "page": "kCompRand", "title": "Function that fits the mixed-SCGLR model", "topics": [ "kCompRand" ] }, { "page": "methodSR", "title": "Regularization criterion types", "topics": [ "methodSR" ] }, { "page": "multivariateFormula", "title": "Formula construction", "topics": [ "multivariateFormula" ] }, { "page": "pairs.SCGLR", "title": "Pairwise scglr plot on components", "topics": [ "pairs.SCGLR" ] }, { "page": "plot.SCGLR", "title": "SCGLR generic plot", "topics": [ "plot.SCGLR" ] }, { "page": "plot.SCGLRTHM", "title": "SCGLRTHM generic plot", "topics": [ "plot.SCGLRTHM" ] }, { "page": "scglr", "title": "Function that fits the scglr model", "topics": [ "scglr" ] }, { "page": "scglrCrossVal", "title": "Function that fits and selects the number of component by cross-validation.", "topics": [ "scglrCrossVal" ] }, { "page": "scglrTheme", "title": "Function that fits the theme model", "topics": [ "scglrTheme" ] }, { "page": "scglrThemeBackward", "title": "Theme Backward selection", "topics": [ "scglrThemeBackward" ] }, { "page": "screeplot.SCGLR", "title": "Screeplot of percent of overall X variance captured by component", "topics": [ "screeplot.SCGLR" ] }, { "page": "screeplot.SCGLRTHM", "title": "Screeplot of percent of overall X variance captured by component", "topics": [ "screeplot.SCGLRTHM" ] } ], "_readme": "https://github.com/scnext/scglr/raw/HEAD/README.md", "_rundeps": [ "ade4", "cli", "cpp11", "farver", "Formula", "ggplot2", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "MASS", "Matrix", "pixmap", "pls", "pROC", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "S7", "scales", "sp", "vctrs", "viridisLite", "withr" ], "_score": 3.785329835010767, "_indexed": true, "_nocasepkg": "scglr", "_universes": [ "scnext", "billy34" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.1.9000", "date": "2026-05-09T07:33:52.000Z", "distro": "noble", "commit": "01d669f0626c936278dea9020ce91df67929dfcf", "fileid": "c0a39daf350c7e44f5ee1f20ab463631fac35628e1e18fe10fdc2873a7570857", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/scnext/actions/runs/25595354656" }, { "r": "4.6.0", "os": "linux", "version": "3.1.9000", "date": "2026-05-09T07:34:00.000Z", "distro": "noble", "commit": "01d669f0626c936278dea9020ce91df67929dfcf", "fileid": "3f92dd6a55e759af90faf0dd9a552dc030a12758d234268327fe232160b86020", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/scnext/actions/runs/25595354656" }, { "r": "4.5.3", "os": "mac", "version": "3.1.9000", "date": "2026-05-09T07:34:17.000Z", "commit": "01d669f0626c936278dea9020ce91df67929dfcf", "fileid": "9de7693b27168b1e78725ccac4f95ccd1635e8bea8515ce313cf4d44dfc493c5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/scnext/actions/runs/25595354656" }, { "r": "4.6.0", "os": "mac", "version": "3.1.9000", "date": "2026-05-09T07:33:48.000Z", "commit": "01d669f0626c936278dea9020ce91df67929dfcf", "fileid": "8550f79ac25da8bff8e6f2ed0a1b5859aab06fb7a85bb061ebea7e87b0fd3b92", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/scnext/actions/runs/25595354656" }, { "r": "4.7.0", "os": "win", "version": "3.1.9000", "date": "2026-05-09T07:33:20.000Z", "commit": "01d669f0626c936278dea9020ce91df67929dfcf", "fileid": "46840ff64f7f771f7da86c2e81458cc8ddff87a0f6cba4a99d790b7963bc8aed", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/scnext/actions/runs/25595354656" }, { "r": "4.5.3", "os": "win", "version": "3.1.9000", "date": "2026-05-09T07:33:03.000Z", "commit": "01d669f0626c936278dea9020ce91df67929dfcf", "fileid": "1577763099e85c5bd301e625138fa5f7983a49d8c19070dd7e5d2403bd0d76be", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/scnext/actions/runs/25595354656" }, { "r": "4.6.0", "os": "win", "version": "3.1.9000", "date": "2026-05-09T07:33:15.000Z", "commit": "01d669f0626c936278dea9020ce91df67929dfcf", "fileid": "a34b4abcf7f0ce8cf103ec41494a827d358727f831626935b7c85e4946a33742", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/scnext/actions/runs/25595354656" }, { "r": "4.6.0", "os": "wasm", "version": "3.1.9000", "date": "2026-05-22T13:15:03.000Z", "commit": "01d669f0626c936278dea9020ce91df67929dfcf", "fileid": "a25d2a74ea5fa08385ff3ade19c3623595506a37c901920cd7b2b0f01ddd320c", "status": "success", "buildurl": "https://github.com/r-universe/scnext/actions/runs/25595354656" } ] }